Format conversion

agtools can perform the following graph file format conversions.

• FASTG to GFA
• GFA to FASTG
• ASQG to GFA
• GFA to ASQG
• GFA to GraphViz DOT
• GFA to ABySS DOT
• GFA to FASTA
• GFA to adjacency matrix

You can refer to the CLI reference for details on the commands available for these format conversions.

Please refer to the file formats section for further details on the different assembly graph file formats.